Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Syne4Q8CII8 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Syne4Q8CII8 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Syne4Q8CII8 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Syne4Q8CII8 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Syne4Q8CII8 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Syne4Q8CII8 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Syne4Q8CII8 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Syne4Q8CII8 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Gm12266-201ENSMUST00000120311 962 ntBASIC14.64□□□□□ -0.07
Syne4Q8CII8 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC14.64□□□□□ -0.07
Syne4Q8CII8 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Gm17040-202ENSMUST00000170597 889 ntBASIC14.64□□□□□ -0.07
Syne4Q8CII8 Ighv5-7-201ENSMUST00000192302 244 ntBASIC14.64□□□□□ -0.07
Syne4Q8CII8 Gm37835-201ENSMUST00000193305 361 ntBASIC14.64□□□□□ -0.07
Syne4Q8CII8 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Syne4Q8CII8 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Mir7221-201ENSMUST00000184009 72 ntBASIC14.63□□□□□ -0.07
Syne4Q8CII8 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Gm43830-201ENSMUST00000198760 1067 ntBASIC14.63□□□□□ -0.07
Syne4Q8CII8 AU022133-201ENSMUST00000200601 873 ntBASIC14.63□□□□□ -0.07
Syne4Q8CII8 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC14.63□□□□□ -0.07
Syne4Q8CII8 AC107638.1-201ENSMUST00000213690 1061 ntBASIC14.63□□□□□ -0.07
Syne4Q8CII8 AC141438.2-201ENSMUST00000215068 271 ntBASIC14.63□□□□□ -0.07
Syne4Q8CII8 Gm18730-201ENSMUST00000218038 343 ntBASIC14.63□□□□□ -0.07
Syne4Q8CII8 AC135114.1-201ENSMUST00000228682 270 ntBASIC14.63□□□□□ -0.07
Syne4Q8CII8 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Syne4Q8CII8 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Syne4Q8CII8 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Syne4Q8CII8 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Syne4Q8CII8 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Syne4Q8CII8 Gm37736-201ENSMUST00000193564 2802 ntBASIC14.62□□□□□ -0.07
Syne4Q8CII8 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Syne4Q8CII8 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Syne4Q8CII8 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Syne4Q8CII8 Gm38042-201ENSMUST00000191614 5208 ntBASIC14.62□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms