Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Gm3695-201ENSMUST00000087222 1009 ntBASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Gm6244-201ENSMUST00000178732 841 ntBASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Gm7067-201ENSMUST00000207698 1249 ntBASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Gm9899-201ENSMUST00000065519 555 ntBASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Gm5466-201ENSMUST00000119395 1890 ntBASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sh3rf1Q69ZI1 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Gm15240-201ENSMUST00000118156 720 ntBASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 AC166349.1-201ENSMUST00000220866 695 ntBASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sh3rf1Q69ZI1 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Mbnl2-204ENSMUST00000227012 2390 ntBASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms