Protein–RNA interactions for Protein: Q62205

Scn9a, Sodium channel protein type 9 subunit alpha, mousemouse

Predictions only

Length 1,984 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn9aQ62205 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Scn9aQ62205 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Gm12501-201ENSMUST00000119163 529 ntBASIC15□□□□□ -0.01
Scn9aQ62205 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Scn9aQ62205 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Scn9aQ62205 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Scn9aQ62205 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
Scn9aQ62205 Gm4607-201ENSMUST00000206649 577 ntBASIC15□□□□□ -0.01
Scn9aQ62205 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC15□□□□□ -0.01
Scn9aQ62205 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Scn9aQ62205 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Scn9aQ62205 Gm8617-201ENSMUST00000118796 2222 ntBASIC15□□□□□ -0.01
Scn9aQ62205 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Gm37912-201ENSMUST00000191895 3076 ntBASIC15□□□□□ -0.01
Scn9aQ62205 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC15□□□□□ -0.01
Scn9aQ62205 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Scn9aQ62205 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC15□□□□□ -0.01
Scn9aQ62205 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC15□□□□□ -0.01
Scn9aQ62205 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Scn9aQ62205 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Scn9aQ62205 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scn9aQ62205 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC14.99□□□□□ -0.01
Scn9aQ62205 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Scn9aQ62205 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Scn9aQ62205 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scn9aQ62205 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Scn9aQ62205 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scn9aQ62205 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Scn9aQ62205 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scn9aQ62205 Gm25881-201ENSMUST00000157783 103 ntBASIC14.99□□□□□ -0.01
Scn9aQ62205 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Scn9aQ62205 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC14.99□□□□□ -0.01
Scn9aQ62205 AC154252.2-201ENSMUST00000223593 767 ntBASIC14.99□□□□□ -0.01
Scn9aQ62205 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scn9aQ62205 Ginm1-202ENSMUST00000065124 300 ntBASIC14.99□□□□□ -0.01
Scn9aQ62205 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC14.99□□□□□ -0.01
Scn9aQ62205 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Scn9aQ62205 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC14.99□□□□□ -0.01
Scn9aQ62205 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scn9aQ62205 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scn9aQ62205 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC14.99□□□□□ -0.01
Scn9aQ62205 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
Scn9aQ62205 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Scn9aQ62205 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Scn9aQ62205 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC14.99□□□□□ -0.01
Scn9aQ62205 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scn9aQ62205 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scn9aQ62205 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scn9aQ62205 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Scn9aQ62205 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC14.98□□□□□ -0.01
Scn9aQ62205 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
Scn9aQ62205 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC14.98□□□□□ -0.01
Scn9aQ62205 Gm9358-201ENSMUST00000183067 927 ntBASIC14.98□□□□□ -0.01
Scn9aQ62205 Gm27530-201ENSMUST00000184096 98 ntBASIC14.98□□□□□ -0.01
Scn9aQ62205 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC14.98□□□□□ -0.01
Scn9aQ62205 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC14.98□□□□□ -0.01
Scn9aQ62205 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Scn9aQ62205 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Scn9aQ62205 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scn9aQ62205 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC14.98□□□□□ -0.01
Scn9aQ62205 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scn9aQ62205 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Scn9aQ62205 Gm18626-201ENSMUST00000221512 1409 ntBASIC14.98□□□□□ -0.01
Scn9aQ62205 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scn9aQ62205 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Scn9aQ62205 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Scn9aQ62205 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC14.98□□□□□ -0.01
Scn9aQ62205 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scn9aQ62205 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Scn9aQ62205 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Scn9aQ62205 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 61.9 ms