Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Upf3bQ3ULL6 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Upf3bQ3ULL6 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Upf3bQ3ULL6 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Upf3bQ3ULL6 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Upf3bQ3ULL6 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Upf3bQ3ULL6 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Gm7002-201ENSMUST00000221386 2165 ntBASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3bQ3ULL6 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 AC114008.2-201ENSMUST00000227699 1347 ntBASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Gm10176-201ENSMUST00000159707 2264 ntBASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Gm15824-201ENSMUST00000119516 955 ntBASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Gm2231-201ENSMUST00000125661 612 ntBASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Gm4271-201ENSMUST00000174444 973 ntBASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Gm10146-201ENSMUST00000072739 309 ntBASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3bQ3ULL6 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Gm29127-201ENSMUST00000188304 517 ntBASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Gm6266-201ENSMUST00000203844 806 ntBASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3bQ3ULL6 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms