Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
Cux1P53564 Gm37448-201ENSMUST00000192795 697 ntBASIC19.66■□□□□ 0.74
Cux1P53564 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cux1P53564 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Cux1P53564 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cux1P53564 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Cux1P53564 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cux1P53564 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cux1P53564 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC19.65■□□□□ 0.74
Cux1P53564 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cux1P53564 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Cux1P53564 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cux1P53564 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cux1P53564 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
Cux1P53564 Gm13035-201ENSMUST00000117496 342 ntBASIC19.65■□□□□ 0.74
Cux1P53564 Mir6546-201ENSMUST00000184460 62 ntBASIC19.65■□□□□ 0.74
Cux1P53564 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC19.65■□□□□ 0.74
Cux1P53564 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cux1P53564 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cux1P53564 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cux1P53564 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Cux1P53564 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Cux1P53564 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC19.65■□□□□ 0.74
Cux1P53564 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cux1P53564 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Cux1P53564 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Cux1P53564 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Cux1P53564 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.74
Cux1P53564 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.74
Cux1P53564 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC19.64■□□□□ 0.73
Cux1P53564 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Cux1P53564 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Gm9550-201ENSMUST00000161130 862 ntBASIC19.64■□□□□ 0.73
Cux1P53564 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Gm27627-201ENSMUST00000183644 150 ntBASIC19.64■□□□□ 0.73
Cux1P53564 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Gm44545-201ENSMUST00000208262 746 ntBASIC19.64■□□□□ 0.73
Cux1P53564 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC19.64■□□□□ 0.73
Cux1P53564 AC154252.2-201ENSMUST00000223593 767 ntBASIC19.64■□□□□ 0.73
Cux1P53564 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cux1P53564 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
Cux1P53564 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Cux1P53564 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Cux1P53564 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC19.63■□□□□ 0.73
Cux1P53564 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC19.63■□□□□ 0.73
Cux1P53564 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC19.63■□□□□ 0.73
Cux1P53564 H2-Q3-201ENSMUST00000172583 608 ntBASIC19.63■□□□□ 0.73
Cux1P53564 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Cux1P53564 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Cux1P53564 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cux1P53564 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cux1P53564 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cux1P53564 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cux1P53564 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Cux1P53564 Gm24934-201ENSMUST00000103764 111 ntBASIC19.62■□□□□ 0.73
Cux1P53564 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cux1P53564 Gm13461-201ENSMUST00000120980 662 ntBASIC19.62■□□□□ 0.73
Cux1P53564 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC19.62■□□□□ 0.73
Cux1P53564 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cux1P53564 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC19.62■□□□□ 0.73
Cux1P53564 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cux1P53564 Gm5525-201ENSMUST00000190438 1312 ntBASIC19.62■□□□□ 0.73
Cux1P53564 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cux1P53564 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cux1P53564 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cux1P53564 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
Cux1P53564 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cux1P53564 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
Cux1P53564 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cux1P53564 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cux1P53564 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms