Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col1a1P11087 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col1a1P11087 Gm15711-201ENSMUST00000118889 535 ntBASIC15.02■□□□□ -0
Col1a1P11087 Gm14665-201ENSMUST00000122294 557 ntBASIC15.02■□□□□ -0
Col1a1P11087 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC15.02■□□□□ -0
Col1a1P11087 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC15.02■□□□□ -0
Col1a1P11087 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC15.02■□□□□ -0
Col1a1P11087 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC15.02■□□□□ -0
Col1a1P11087 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC15.02■□□□□ -0
Col1a1P11087 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Col1a1P11087 Gm38058-201ENSMUST00000194323 4368 ntBASIC15.02■□□□□ -0
Col1a1P11087 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col1a1P11087 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col1a1P11087 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col1a1P11087 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col1a1P11087 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col1a1P11087 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col1a1P11087 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col1a1P11087 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col1a1P11087 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col1a1P11087 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col1a1P11087 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col1a1P11087 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col1a1P11087 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Col1a1P11087 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col1a1P11087 Gm44094-201ENSMUST00000204703 2030 ntBASIC15.02□□□□□ -0.01
Col1a1P11087 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col1a1P11087 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Gm8566-201ENSMUST00000120174 465 ntBASIC15.01□□□□□ -0.01
Col1a1P11087 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC15.01□□□□□ -0.01
Col1a1P11087 Gm10051-201ENSMUST00000145209 414 ntBASIC15.01□□□□□ -0.01
Col1a1P11087 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
Col1a1P11087 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC15.01□□□□□ -0.01
Col1a1P11087 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC15.01□□□□□ -0.01
Col1a1P11087 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col1a1P11087 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Col1a1P11087 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC15.01□□□□□ -0.01
Col1a1P11087 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Gm2420-202ENSMUST00000202224 2249 ntBASIC15.01□□□□□ -0.01
Col1a1P11087 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Gm6039-201ENSMUST00000121667 1250 ntBASIC15.01□□□□□ -0.01
Col1a1P11087 Gm5863-201ENSMUST00000121760 1008 ntBASIC15.01□□□□□ -0.01
Col1a1P11087 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC15.01□□□□□ -0.01
Col1a1P11087 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Col1a1P11087 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC15.01□□□□□ -0.01
Col1a1P11087 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC15.01□□□□□ -0.01
Col1a1P11087 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col1a1P11087 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Gm44999-201ENSMUST00000207456 1493 ntBASIC15□□□□□ -0.01
Col1a1P11087 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Col1a1P11087 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Col1a1P11087 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
Col1a1P11087 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Gm14058-201ENSMUST00000116082 735 ntBASIC15□□□□□ -0.01
Col1a1P11087 Gm6506-201ENSMUST00000119775 1136 ntBASIC15□□□□□ -0.01
Col1a1P11087 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC15□□□□□ -0.01
Col1a1P11087 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC15□□□□□ -0.01
Col1a1P11087 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC15□□□□□ -0.01
Col1a1P11087 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC15□□□□□ -0.01
Col1a1P11087 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col1a1P11087 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col1a1P11087 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms