Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Nkx2-4Q9EQM3 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Nkx2-4Q9EQM3 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
Nkx2-4Q9EQM3 Gm28182-201ENSMUST00000188354 2477 ntBASIC13.3□□□□□ -0.28
Nkx2-4Q9EQM3 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Nkx2-4Q9EQM3 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Nkx2-4Q9EQM3 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Nkx2-4Q9EQM3 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Nkx2-4Q9EQM3 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC13.3□□□□□ -0.28
Nkx2-4Q9EQM3 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Nkx2-4Q9EQM3 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm6992-201ENSMUST00000217973 1607 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm19353-201ENSMUST00000184561 445 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm29615-201ENSMUST00000185371 697 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm28224-201ENSMUST00000186078 697 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm29001-201ENSMUST00000186177 697 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm28292-201ENSMUST00000186593 697 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm28101-201ENSMUST00000187608 697 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm29076-201ENSMUST00000187689 697 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm28302-201ENSMUST00000187931 697 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm28646-201ENSMUST00000188220 697 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm28205-201ENSMUST00000189177 697 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm29032-201ENSMUST00000189797 697 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm28695-201ENSMUST00000190300 697 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm37448-201ENSMUST00000192795 697 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 AC108416.1-202ENSMUST00000228927 1201 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm44999-201ENSMUST00000207456 1493 ntBASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Nkx2-4Q9EQM3 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Gm10051-201ENSMUST00000145209 414 ntBASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Gm24845-201ENSMUST00000158034 109 ntBASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Gm9540-201ENSMUST00000188230 478 ntBASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC13.28□□□□□ -0.28
Nkx2-4Q9EQM3 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Nkx2-4Q9EQM3 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 67 ms