Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Use1Q9CQ56 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Use1Q9CQ56 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Use1Q9CQ56 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Use1Q9CQ56 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Use1Q9CQ56 Gm4780-202ENSMUST00000215200 2644 ntBASIC12.33□□□□□ -0.44
Use1Q9CQ56 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Use1Q9CQ56 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Use1Q9CQ56 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Use1Q9CQ56 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC12.33□□□□□ -0.44
Use1Q9CQ56 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Use1Q9CQ56 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Use1Q9CQ56 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Use1Q9CQ56 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Use1Q9CQ56 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Gm24694-201ENSMUST00000180054 110 ntBASIC12.32□□□□□ -0.44
Use1Q9CQ56 Gm27663-201ENSMUST00000184839 110 ntBASIC12.32□□□□□ -0.44
Use1Q9CQ56 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC12.32□□□□□ -0.44
Use1Q9CQ56 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 AC134335.2-201ENSMUST00000227660 440 ntBASIC12.32□□□□□ -0.44
Use1Q9CQ56 AC132467.2-202ENSMUST00000227726 559 ntBASIC12.32□□□□□ -0.44
Use1Q9CQ56 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Gm6263-201ENSMUST00000120029 1342 ntBASIC12.32□□□□□ -0.44
Use1Q9CQ56 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Use1Q9CQ56 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Gm9025-201ENSMUST00000122415 1575 ntBASIC12.31□□□□□ -0.44
Use1Q9CQ56 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Use1Q9CQ56 AC113060.1-201ENSMUST00000225689 1573 ntBASIC12.31□□□□□ -0.44
Use1Q9CQ56 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 AC096628.2-201ENSMUST00000225443 1413 ntBASIC12.31□□□□□ -0.44
Use1Q9CQ56 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Gm44872-201ENSMUST00000207864 420 ntBASIC12.31□□□□□ -0.44
Use1Q9CQ56 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC12.31□□□□□ -0.44
Use1Q9CQ56 AC132863.2-201ENSMUST00000226643 799 ntBASIC12.31□□□□□ -0.44
Use1Q9CQ56 AC154276.1-201ENSMUST00000228874 1299 ntBASIC12.31□□□□□ -0.44
Use1Q9CQ56 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Hist1h2al-201ENSMUST00000091708 339 ntBASIC12.31□□□□□ -0.44
Use1Q9CQ56 Gm42480-201ENSMUST00000198434 2595 ntBASIC12.31□□□□□ -0.44
Use1Q9CQ56 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Gm8798-201ENSMUST00000211877 1661 ntBASIC12.31□□□□□ -0.44
Use1Q9CQ56 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Use1Q9CQ56 Gm42863-201ENSMUST00000197875 2958 ntBASIC12.3□□□□□ -0.44
Use1Q9CQ56 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Use1Q9CQ56 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Use1Q9CQ56 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Use1Q9CQ56 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Use1Q9CQ56 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Use1Q9CQ56 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 69.9 ms