Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm42928-201ENSMUST00000197338 3339 ntBASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps53Q8CCB4 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm7899-201ENSMUST00000192935 1897 ntBASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm12537-201ENSMUST00000119266 1002 ntBASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm12070-201ENSMUST00000119551 1002 ntBASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm12671-201ENSMUST00000119978 1002 ntBASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm13292-201ENSMUST00000120014 1000 ntBASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm12403-201ENSMUST00000121384 959 ntBASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm2639-201ENSMUST00000156881 1297 ntBASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm22331-201ENSMUST00000158066 136 ntBASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm10359-201ENSMUST00000180167 1002 ntBASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm12033-201ENSMUST00000180654 1002 ntBASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm5559-201ENSMUST00000180755 1002 ntBASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm4335-201ENSMUST00000182581 1004 ntBASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm27514-201ENSMUST00000183692 110 ntBASIC15.17■□□□□ 0.02
Vps53Q8CCB4 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gm5161-201ENSMUST00000075243 853 ntBASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps53Q8CCB4 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Ankra2-208ENSMUST00000226100 1476 ntBASIC15.16■□□□□ 0.02
Vps53Q8CCB4 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Gm43273-201ENSMUST00000199649 2594 ntBASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Gm18473-201ENSMUST00000220543 868 ntBASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps53Q8CCB4 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms