Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Gm44401-201ENSMUST00000204462 2375 ntBASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Gm25043-201ENSMUST00000158604 212 ntBASIC17.78■□□□□ 0.44
Usp40Q8BWR4 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 AC166095.1-201ENSMUST00000223731 1241 ntBASIC17.78■□□□□ 0.44
Usp40Q8BWR4 AC113031.8-201ENSMUST00000227856 631 ntBASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Usp40Q8BWR4 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Mir3102-201ENSMUST00000175555 104 ntBASIC17.77■□□□□ 0.44
Usp40Q8BWR4 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Gm38317-201ENSMUST00000195564 343 ntBASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Gm45186-201ENSMUST00000206874 478 ntBASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Gm44967-201ENSMUST00000207047 631 ntBASIC17.77■□□□□ 0.44
Usp40Q8BWR4 AC108416.1-202ENSMUST00000228927 1201 ntBASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp40Q8BWR4 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC17.77■□□□□ 0.43
Usp40Q8BWR4 Gm44094-201ENSMUST00000204703 2030 ntBASIC17.77■□□□□ 0.43
Usp40Q8BWR4 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Usp40Q8BWR4 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Usp40Q8BWR4 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Usp40Q8BWR4 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Gm10782-202ENSMUST00000223775 1480 ntBASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Acot6-202ENSMUST00000222921 3622 ntBASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Gm11930-201ENSMUST00000117788 190 ntBASIC17.76■□□□□ 0.43
Usp40Q8BWR4 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Gm5869-201ENSMUST00000200248 1257 ntBASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Gm13097-201ENSMUST00000210722 397 ntBASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Gm45925-201ENSMUST00000218882 744 ntBASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp40Q8BWR4 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms