Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col11a1Q61245 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col11a1Q61245 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col11a1Q61245 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col11a1Q61245 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Col11a1Q61245 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col11a1Q61245 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col11a1Q61245 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC14.27□□□□□ -0.13
Col11a1Q61245 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
Col11a1Q61245 Gm11509-201ENSMUST00000117358 325 ntBASIC14.27□□□□□ -0.13
Col11a1Q61245 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC14.27□□□□□ -0.13
Col11a1Q61245 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC14.27□□□□□ -0.13
Col11a1Q61245 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC14.27□□□□□ -0.13
Col11a1Q61245 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Col11a1Q61245 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Col11a1Q61245 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.13
Col11a1Q61245 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Col11a1Q61245 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC14.27□□□□□ -0.13
Col11a1Q61245 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col11a1Q61245 Snora73b-201ENSMUST00000083419 205 ntBASIC14.27□□□□□ -0.13
Col11a1Q61245 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col11a1Q61245 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Col11a1Q61245 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
Col11a1Q61245 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC14.26□□□□□ -0.13
Col11a1Q61245 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Gm13047-201ENSMUST00000117116 815 ntBASIC14.26□□□□□ -0.13
Col11a1Q61245 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC14.26□□□□□ -0.13
Col11a1Q61245 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Gm43520-201ENSMUST00000197996 164 ntBASIC14.26□□□□□ -0.13
Col11a1Q61245 CT571245.2-201ENSMUST00000218421 305 ntBASIC14.26□□□□□ -0.13
Col11a1Q61245 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC14.26□□□□□ -0.13
Col11a1Q61245 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC14.26□□□□□ -0.13
Col11a1Q61245 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Col11a1Q61245 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
Col11a1Q61245 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col11a1Q61245 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Col11a1Q61245 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Col11a1Q61245 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
Col11a1Q61245 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
Col11a1Q61245 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
Col11a1Q61245 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
Col11a1Q61245 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC14.25□□□□□ -0.13
Col11a1Q61245 Gm28386-201ENSMUST00000189147 1849 ntBASIC14.25□□□□□ -0.13
Col11a1Q61245 Ighv4-2-201ENSMUST00000192975 362 ntBASIC14.25□□□□□ -0.13
Col11a1Q61245 Gm43056-201ENSMUST00000197865 2791 ntBASIC14.25□□□□□ -0.13
Col11a1Q61245 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC14.25□□□□□ -0.13
Col11a1Q61245 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
Col11a1Q61245 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC14.25□□□□□ -0.13
Col11a1Q61245 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC14.25□□□□□ -0.13
Col11a1Q61245 CT009713.8-202ENSMUST00000224732 385 ntBASIC14.25□□□□□ -0.13
Col11a1Q61245 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC14.25□□□□□ -0.13
Col11a1Q61245 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Col11a1Q61245 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.25□□□□□ -0.13
Col11a1Q61245 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Mir1901-201ENSMUST00000122616 78 ntBASIC14.25□□□□□ -0.13
Col11a1Q61245 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Gm5733-201ENSMUST00000190232 939 ntBASIC14.25□□□□□ -0.13
Col11a1Q61245 Gm37028-201ENSMUST00000194276 107 ntBASIC14.25□□□□□ -0.13
Col11a1Q61245 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC14.25□□□□□ -0.13
Col11a1Q61245 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col11a1Q61245 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms