Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Cln3Q61124 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cln3Q61124 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cln3Q61124 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Cln3Q61124 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cln3Q61124 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cln3Q61124 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cln3Q61124 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Cln3Q61124 AC126444.1-201ENSMUST00000225938 1768 ntBASIC14.22□□□□□ -0.13
Cln3Q61124 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC14.22□□□□□ -0.13
Cln3Q61124 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC14.22□□□□□ -0.13
Cln3Q61124 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Cln3Q61124 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC14.22□□□□□ -0.13
Cln3Q61124 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Gm17193-201ENSMUST00000116345 691 ntTSL 5 BASIC14.22□□□□□ -0.13
Cln3Q61124 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC14.22□□□□□ -0.13
Cln3Q61124 Gm22902-201ENSMUST00000158488 302 ntBASIC14.22□□□□□ -0.13
Cln3Q61124 Gm16296-201ENSMUST00000159905 325 ntBASIC14.22□□□□□ -0.13
Cln3Q61124 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC14.22□□□□□ -0.13
Cln3Q61124 Gm8856-201ENSMUST00000185254 1144 ntBASIC14.22□□□□□ -0.13
Cln3Q61124 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC14.22□□□□□ -0.13
Cln3Q61124 Gm37201-201ENSMUST00000191845 523 ntBASIC14.22□□□□□ -0.13
Cln3Q61124 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Cln3Q61124 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
Cln3Q61124 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cln3Q61124 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Cln3Q61124 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
Cln3Q61124 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Gm43908-201ENSMUST00000205074 1472 ntBASIC14.21□□□□□ -0.13
Cln3Q61124 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Cln3Q61124 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Gm23200-201ENSMUST00000104379 132 ntBASIC14.21□□□□□ -0.13
Cln3Q61124 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Cln3Q61124 Gm16275-201ENSMUST00000147774 712 ntTSL 3 BASIC14.21□□□□□ -0.13
Cln3Q61124 Gm24845-201ENSMUST00000158034 109 ntBASIC14.21□□□□□ -0.13
Cln3Q61124 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Gm28450-201ENSMUST00000187349 638 ntBASIC14.21□□□□□ -0.13
Cln3Q61124 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC14.21□□□□□ -0.13
Cln3Q61124 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Gm42626-201ENSMUST00000196866 1148 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Gm19208-201ENSMUST00000213861 912 ntBASIC14.21□□□□□ -0.13
Cln3Q61124 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC14.21□□□□□ -0.13
Cln3Q61124 AC123665.1-201ENSMUST00000228204 438 ntBASIC14.21□□□□□ -0.13
Cln3Q61124 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC14.21□□□□□ -0.13
Cln3Q61124 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cln3Q61124 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Cln3Q61124 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Cln3Q61124 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Cln3Q61124 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Cln3Q61124 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Cln3Q61124 Gm2420-202ENSMUST00000202224 2249 ntBASIC14.21□□□□□ -0.14
Cln3Q61124 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Cln3Q61124 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Cln3Q61124 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Cln3Q61124 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC14.2□□□□□ -0.14
Cln3Q61124 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cln3Q61124 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Cln3Q61124 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cln3Q61124 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cln3Q61124 Gm28386-201ENSMUST00000189147 1849 ntBASIC14.2□□□□□ -0.14
Cln3Q61124 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC14.2□□□□□ -0.14
Cln3Q61124 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC14.2□□□□□ -0.14
Cln3Q61124 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Cln3Q61124 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cln3Q61124 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cln3Q61124 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cln3Q61124 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cln3Q61124 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms