Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Col28a1Q2UY11 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Gm9115-201ENSMUST00000120192 1348 ntBASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Gm8602-201ENSMUST00000184045 607 ntBASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Nudt18-202ENSMUST00000228554 3619 ntBASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col28a1Q2UY11 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Zfp125-201ENSMUST00000079237 2488 ntBASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Gm45668-201ENSMUST00000211271 493 ntBASIC12.66□□□□□ -0.38
Col28a1Q2UY11 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Gm7390-201ENSMUST00000212452 1216 ntBASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col28a1Q2UY11 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms