Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm37259-201ENSMUST00000193903 849 ntBASIC14.13□□□□□ -0.15
Trim54Q9ERP3 AC135669.1-202ENSMUST00000216742 540 ntBASIC14.13□□□□□ -0.15
Trim54Q9ERP3 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Gm26083-201ENSMUST00000157904 193 ntBASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Gm8738-201ENSMUST00000172606 329 ntBASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Gm30238-201ENSMUST00000195528 2603 ntBASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Trim54Q9ERP3 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Gm24255-201ENSMUST00000104481 128 ntBASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Ighv1-62-201ENSMUST00000193406 350 ntBASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim54Q9ERP3 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 AC101945.2-201ENSMUST00000227886 1377 ntBASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Gm22323-201ENSMUST00000103832 109 ntBASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Gm15808-201ENSMUST00000119046 604 ntBASIC14.1□□□□□ -0.15
Trim54Q9ERP3 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms