Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Gm24644-201ENSMUST00000157114 139 ntBASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Gm9200-201ENSMUST00000118513 1354 ntBASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Gm14660-201ENSMUST00000119809 575 ntBASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Mir6420-201ENSMUST00000185032 102 ntBASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Gm29608-201ENSMUST00000190444 463 ntBASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Gm9728-201ENSMUST00000200197 1055 ntBASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 AC073947.2-201ENSMUST00000215888 1130 ntBASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Gm18473-201ENSMUST00000220543 868 ntBASIC12.13□□□□□ -0.47
Cdc40Q9DC48 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdc40Q9DC48 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Gm7899-201ENSMUST00000192935 1897 ntBASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Gm22331-201ENSMUST00000158066 136 ntBASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Snora78-201ENSMUST00000158630 128 ntBASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdc40Q9DC48 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms