Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm44891-201ENSMUST00000208817 2223 ntBASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Vps28Q9D1C8 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Mir874-201ENSMUST00000104769 76 ntBASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Gm12384-201ENSMUST00000119228 919 ntBASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Gm13123-201ENSMUST00000122173 492 ntBASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Gm2639-201ENSMUST00000156881 1297 ntBASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 AC122305.4-201ENSMUST00000216159 1206 ntBASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Gm5939-201ENSMUST00000119613 2874 ntBASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Vps28Q9D1C8 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Gm45706-201ENSMUST00000213063 2136 ntBASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Gm38049-201ENSMUST00000195698 1372 ntBASIC13.37□□□□□ -0.27
Vps28Q9D1C8 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Gm10146-201ENSMUST00000072739 309 ntBASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Gm7114-201ENSMUST00000190159 1789 ntBASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Gm7553-201ENSMUST00000185805 1426 ntBASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
Vps28Q9D1C8 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms