Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Gm44397-201ENSMUST00000195950 113 ntBASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Gm44985-201ENSMUST00000206202 1016 ntBASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 CU024892.2-201ENSMUST00000224608 832 ntBASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Gm44851-201ENSMUST00000205735 2309 ntBASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Gm22331-201ENSMUST00000158066 136 ntBASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Gm6013-201ENSMUST00000212264 699 ntBASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Gm45880-201ENSMUST00000213041 853 ntBASIC14.63□□□□□ -0.07
Ushbp1Q8R370 AC173210.1-201ENSMUST00000222341 1131 ntBASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Gm7553-201ENSMUST00000185805 1426 ntBASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 AC151895.1-201ENSMUST00000219025 1742 ntBASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ushbp1Q8R370 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Gm2639-201ENSMUST00000156881 1297 ntBASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Gm27514-201ENSMUST00000183692 110 ntBASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 AC154276.1-201ENSMUST00000228874 1299 ntBASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ushbp1Q8R370 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms