Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Gm5466-201ENSMUST00000119395 1890 ntBASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC13.7□□□□□ -0.22
Upf3aQ3ULJ3 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Gm3786-201ENSMUST00000202659 378 ntBASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Gm9445-201ENSMUST00000207454 1285 ntBASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Gm22058-201ENSMUST00000083393 310 ntBASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC13.69□□□□□ -0.22
Upf3aQ3ULJ3 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 AC123857.2-201ENSMUST00000225756 1582 ntBASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Gm7789-202ENSMUST00000211273 1400 ntBASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Gm8908-201ENSMUST00000121633 1024 ntBASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Gm13570-201ENSMUST00000140763 309 ntBASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Gm23363-201ENSMUST00000175024 79 ntBASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Gm8885-201ENSMUST00000189382 598 ntBASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Gm18212-201ENSMUST00000211678 889 ntBASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Gm14371-201ENSMUST00000138925 1518 ntBASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3aQ3ULJ3 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3aQ3ULJ3 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Upf3aQ3ULJ3 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3aQ3ULJ3 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC13.67□□□□□ -0.22
Upf3aQ3ULJ3 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3aQ3ULJ3 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3aQ3ULJ3 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3aQ3ULJ3 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3aQ3ULJ3 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3aQ3ULJ3 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3aQ3ULJ3 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Upf3aQ3ULJ3 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC13.67□□□□□ -0.22
Upf3aQ3ULJ3 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3aQ3ULJ3 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 46.4 ms