Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col17a1Q07563 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Col17a1Q07563 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Col17a1Q07563 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col17a1Q07563 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col17a1Q07563 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col17a1Q07563 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col17a1Q07563 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col17a1Q07563 Gm11957-201ENSMUST00000118304 779 ntBASIC19.57■□□□□ 0.72
Col17a1Q07563 Gm14921-201ENSMUST00000118643 908 ntBASIC19.57■□□□□ 0.72
Col17a1Q07563 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Col17a1Q07563 Uckl1os-207ENSMUST00000152365 442 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Col17a1Q07563 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC19.57■□□□□ 0.72
Col17a1Q07563 Gm9954-202ENSMUST00000198686 4725 ntBASIC19.57■□□□□ 0.72
Col17a1Q07563 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col17a1Q07563 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
Col17a1Q07563 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col17a1Q07563 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col17a1Q07563 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col17a1Q07563 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col17a1Q07563 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col17a1Q07563 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.56■□□□□ 0.72
Col17a1Q07563 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col17a1Q07563 Gm9768-201ENSMUST00000206007 2861 ntBASIC19.56■□□□□ 0.72
Col17a1Q07563 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Col17a1Q07563 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Col17a1Q07563 Gm14193-201ENSMUST00000105067 153 ntBASIC19.56■□□□□ 0.72
Col17a1Q07563 Bola3-203ENSMUST00000122216 554 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Col17a1Q07563 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC19.56■□□□□ 0.72
Col17a1Q07563 Rhoc-205ENSMUST00000196817 877 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
Col17a1Q07563 BC106175-201ENSMUST00000218578 695 ntTSL 5 BASIC19.56■□□□□ 0.72
Col17a1Q07563 Rhno1-207ENSMUST00000223237 1081 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Col17a1Q07563 Mcpt4-201ENSMUST00000043249 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col17a1Q07563 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col17a1Q07563 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col17a1Q07563 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC19.56■□□□□ 0.72
Col17a1Q07563 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Col17a1Q07563 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col17a1Q07563 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col17a1Q07563 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col17a1Q07563 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC19.56■□□□□ 0.72
Col17a1Q07563 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col17a1Q07563 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col17a1Q07563 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Col17a1Q07563 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
Col17a1Q07563 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Gm11560-201ENSMUST00000117567 948 ntBASIC19.55■□□□□ 0.72
Col17a1Q07563 Gm12579-201ENSMUST00000118040 783 ntBASIC19.55■□□□□ 0.72
Col17a1Q07563 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC19.55■□□□□ 0.72
Col17a1Q07563 Gm2696-202ENSMUST00000220393 684 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Col17a1Q07563 Cma1-202ENSMUST00000226280 1090 ntAPPRIS ALT2 BASIC19.55■□□□□ 0.72
Col17a1Q07563 CT030652.1-201ENSMUST00000227377 1235 ntBASIC19.55■□□□□ 0.72
Col17a1Q07563 Cma1-201ENSMUST00000022834 1074 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Tnfrsf18-201ENSMUST00000040274 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Rpl3-201ENSMUST00000081650 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Col17a1Q07563 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Gm2721-201ENSMUST00000222380 1571 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC19.55■□□□□ 0.72
Col17a1Q07563 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC19.55■□□□□ 0.72
Col17a1Q07563 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col17a1Q07563 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col17a1Q07563 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Col17a1Q07563 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC19.54■□□□□ 0.72
Col17a1Q07563 Gm26632-201ENSMUST00000181120 1400 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col17a1Q07563 P4htm-204ENSMUST00000193621 1297 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col17a1Q07563 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC19.54■□□□□ 0.72
Col17a1Q07563 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC19.54■□□□□ 0.72
Col17a1Q07563 Gm7537-201ENSMUST00000221660 1414 ntBASIC19.54■□□□□ 0.72
Col17a1Q07563 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col17a1Q07563 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col17a1Q07563 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col17a1Q07563 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col17a1Q07563 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col17a1Q07563 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.54■□□□□ 0.72
Col17a1Q07563 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col17a1Q07563 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col17a1Q07563 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col17a1Q07563 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Col17a1Q07563 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Col17a1Q07563 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col17a1Q07563 Gm10169-201ENSMUST00000121822 348 ntBASIC19.54■□□□□ 0.72
Col17a1Q07563 Gm25677-201ENSMUST00000174983 72 ntBASIC19.54■□□□□ 0.72
Col17a1Q07563 Gm7069-201ENSMUST00000182418 1008 ntBASIC19.54■□□□□ 0.72
Col17a1Q07563 Gm37782-201ENSMUST00000194879 678 ntBASIC19.54■□□□□ 0.72
Col17a1Q07563 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Col17a1Q07563 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col17a1Q07563 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col17a1Q07563 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Col17a1Q07563 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC19.53■□□□□ 0.72
Col17a1Q07563 Gm12623-201ENSMUST00000119849 1983 ntBASIC19.53■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 73.2 ms