Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Lig3P97386 Gm21038-201ENSMUST00000222205 1383 ntBASIC14.29□□□□□ -0.12
Lig3P97386 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Lig3P97386 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lig3P97386 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lig3P97386 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lig3P97386 Gm14371-201ENSMUST00000138925 1518 ntBASIC14.29□□□□□ -0.12
Lig3P97386 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
Lig3P97386 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Lig3P97386 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lig3P97386 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lig3P97386 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lig3P97386 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC14.28□□□□□ -0.12
Lig3P97386 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC14.28□□□□□ -0.12
Lig3P97386 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC14.28□□□□□ -0.12
Lig3P97386 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Lig3P97386 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC14.28□□□□□ -0.12
Lig3P97386 Gm7993-201ENSMUST00000200970 1384 ntBASIC14.28□□□□□ -0.12
Lig3P97386 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC14.28□□□□□ -0.12
Lig3P97386 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Lig3P97386 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Lig3P97386 Mettl6-204ENSMUST00000227595 1027 ntBASIC14.28□□□□□ -0.12
Lig3P97386 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Lig3P97386 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
Lig3P97386 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lig3P97386 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Lig3P97386 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lig3P97386 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lig3P97386 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Lig3P97386 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lig3P97386 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Lig3P97386 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Lig3P97386 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Mir877-201ENSMUST00000104738 85 ntBASIC14.27□□□□□ -0.13
Lig3P97386 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC14.27□□□□□ -0.13
Lig3P97386 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Gm5069-202ENSMUST00000192714 1011 ntBASIC14.27□□□□□ -0.13
Lig3P97386 Gm43118-201ENSMUST00000199149 775 ntBASIC14.27□□□□□ -0.13
Lig3P97386 Gm43758-201ENSMUST00000199500 367 ntBASIC14.27□□□□□ -0.13
Lig3P97386 Gm43068-201ENSMUST00000201095 1273 ntBASIC14.27□□□□□ -0.13
Lig3P97386 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 AC132317.1-201ENSMUST00000227227 962 ntBASIC14.27□□□□□ -0.13
Lig3P97386 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Lig3P97386 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
Lig3P97386 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lig3P97386 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lig3P97386 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lig3P97386 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lig3P97386 Gm9347-201ENSMUST00000211473 1607 ntBASIC14.26□□□□□ -0.13
Lig3P97386 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Lig3P97386 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Lig3P97386 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lig3P97386 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Lig3P97386 Gm9924-202ENSMUST00000192760 2311 ntBASIC14.26□□□□□ -0.13
Lig3P97386 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lig3P97386 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lig3P97386 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lig3P97386 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lig3P97386 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lig3P97386 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lig3P97386 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Lig3P97386 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lig3P97386 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC14.26□□□□□ -0.13
Lig3P97386 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC14.26□□□□□ -0.13
Lig3P97386 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lig3P97386 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
Lig3P97386 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms