Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Msx1P13297 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC12.49□□□□□ -0.41
Msx1P13297 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC12.49□□□□□ -0.41
Msx1P13297 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC12.49□□□□□ -0.41
Msx1P13297 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Gm8213-201ENSMUST00000118191 441 ntBASIC12.49□□□□□ -0.41
Msx1P13297 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.49□□□□□ -0.41
Msx1P13297 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Msx1P13297 Gm22923-201ENSMUST00000174952 110 ntBASIC12.49□□□□□ -0.41
Msx1P13297 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Msx1P13297 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC12.49□□□□□ -0.41
Msx1P13297 Gm44364-201ENSMUST00000198368 141 ntBASIC12.49□□□□□ -0.41
Msx1P13297 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC12.49□□□□□ -0.41
Msx1P13297 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC12.49□□□□□ -0.41
Msx1P13297 AC116589.3-201ENSMUST00000223034 1165 ntTSL 5 BASIC12.49□□□□□ -0.41
Msx1P13297 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Vmn1r11-201ENSMUST00000071304 900 ntAPPRIS P2 BASIC12.49□□□□□ -0.41
Msx1P13297 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC12.49□□□□□ -0.41
Msx1P13297 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
Msx1P13297 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC12.48□□□□□ -0.41
Msx1P13297 Gm10339-203ENSMUST00000225409 1671 ntBASIC12.48□□□□□ -0.41
Msx1P13297 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Msx1P13297 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC12.48□□□□□ -0.41
Msx1P13297 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC12.48□□□□□ -0.41
Msx1P13297 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Msx1P13297 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Msx1P13297 Proscos-202ENSMUST00000178990 666 ntBASIC12.48□□□□□ -0.41
Msx1P13297 Rpf2-206ENSMUST00000183309 1296 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC12.48□□□□□ -0.41
Msx1P13297 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC12.48□□□□□ -0.41
Msx1P13297 AC133598.1-201ENSMUST00000224327 660 ntBASIC12.48□□□□□ -0.41
Msx1P13297 AC159205.7-201ENSMUST00000225988 692 ntBASIC12.48□□□□□ -0.41
Msx1P13297 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Gm5161-201ENSMUST00000075243 853 ntBASIC12.48□□□□□ -0.41
Msx1P13297 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC12.48□□□□□ -0.41
Msx1P13297 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
Msx1P13297 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Msx1P13297 Gm6198-201ENSMUST00000191337 2929 ntBASIC12.48□□□□□ -0.41
Msx1P13297 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC12.48□□□□□ -0.41
Msx1P13297 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
Msx1P13297 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC12.47□□□□□ -0.41
Msx1P13297 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC12.47□□□□□ -0.41
Msx1P13297 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Msx1P13297 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Msx1P13297 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms