Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smarce1O54941 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Smarce1O54941 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC15.52■□□□□ 0.08
Smarce1O54941 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Smarce1O54941 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC15.52■□□□□ 0.08
Smarce1O54941 Gm44872-201ENSMUST00000207864 420 ntBASIC15.52■□□□□ 0.08
Smarce1O54941 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smarce1O54941 AC135669.1-202ENSMUST00000216742 540 ntBASIC15.52■□□□□ 0.08
Smarce1O54941 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smarce1O54941 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smarce1O54941 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Smarce1O54941 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Smarce1O54941 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Smarce1O54941 Gm3052-202ENSMUST00000188254 2224 ntBASIC15.52■□□□□ 0.07
Smarce1O54941 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Smarce1O54941 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Smarce1O54941 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Smarce1O54941 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Smarce1O54941 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Smarce1O54941 Gm10040-201ENSMUST00000080726 1662 ntBASIC15.51■□□□□ 0.07
Smarce1O54941 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Smarce1O54941 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Smarce1O54941 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC15.51■□□□□ 0.07
Smarce1O54941 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Gm22189-201ENSMUST00000103822 86 ntBASIC15.51■□□□□ 0.07
Smarce1O54941 Gm15321-201ENSMUST00000121290 288 ntBASIC15.51■□□□□ 0.07
Smarce1O54941 Gm12151-201ENSMUST00000121374 290 ntBASIC15.51■□□□□ 0.07
Smarce1O54941 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC15.51■□□□□ 0.07
Smarce1O54941 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC15.51■□□□□ 0.07
Smarce1O54941 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC15.51■□□□□ 0.07
Smarce1O54941 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC15.51■□□□□ 0.07
Smarce1O54941 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC15.51■□□□□ 0.07
Smarce1O54941 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC15.51■□□□□ 0.07
Smarce1O54941 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC15.51■□□□□ 0.07
Smarce1O54941 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Smarce1O54941 Gm44414-201ENSMUST00000203660 2109 ntBASIC15.5■□□□□ 0.07
Smarce1O54941 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Smarce1O54941 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Smarce1O54941 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC15.5■□□□□ 0.07
Smarce1O54941 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC15.5■□□□□ 0.07
Smarce1O54941 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC15.5■□□□□ 0.07
Smarce1O54941 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC15.5■□□□□ 0.07
Smarce1O54941 Gm45195-201ENSMUST00000205597 1008 ntBASIC15.5■□□□□ 0.07
Smarce1O54941 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC15.5■□□□□ 0.07
Smarce1O54941 Gm19220-201ENSMUST00000222682 803 ntBASIC15.5■□□□□ 0.07
Smarce1O54941 AC154305.4-201ENSMUST00000224520 614 ntBASIC15.5■□□□□ 0.07
Smarce1O54941 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Smarce1O54941 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Smarce1O54941 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Rnf17-202ENSMUST00000223627 2077 ntBASIC15.5■□□□□ 0.07
Smarce1O54941 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC15.5■□□□□ 0.07
Smarce1O54941 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Smarce1O54941 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC15.49■□□□□ 0.07
Smarce1O54941 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Smarce1O54941 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Smarce1O54941 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
Smarce1O54941 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Smarce1O54941 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Smarce1O54941 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Smarce1O54941 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Smarce1O54941 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Smarce1O54941 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Smarce1O54941 Kcnk16-202ENSMUST00000225596 2127 ntBASIC15.49■□□□□ 0.07
Smarce1O54941 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms