Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Gm6263-201ENSMUST00000120029 1342 ntBASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Gm21854-201ENSMUST00000179901 471 ntBASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Gm18905-201ENSMUST00000205454 928 ntBASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 AC093022.5-201ENSMUST00000226841 1079 ntBASIC12.91□□□□□ -0.34
Lima1Q9ERG0 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Gm37472-201ENSMUST00000192342 4052 ntBASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Lima1Q9ERG0 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 CT025624.1-201ENSMUST00000224007 2700 ntBASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Gm14719-201ENSMUST00000121891 340 ntBASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 AC132863.2-201ENSMUST00000226643 799 ntBASIC12.9□□□□□ -0.34
Lima1Q9ERG0 AC132467.2-202ENSMUST00000227726 559 ntBASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lima1Q9ERG0 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Lima1Q9ERG0 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Gm3052-202ENSMUST00000188254 2224 ntBASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Lima1Q9ERG0 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 65.7 ms