Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Gm27989-201ENSMUST00000184721 107 ntBASIC12.38□□□□□ -0.43
Use1Q9CQ56 Gm27838-201ENSMUST00000184829 128 ntBASIC12.38□□□□□ -0.43
Use1Q9CQ56 Gm5641-202ENSMUST00000198699 1080 ntBASIC12.38□□□□□ -0.43
Use1Q9CQ56 Gm19078-201ENSMUST00000206311 727 ntBASIC12.38□□□□□ -0.43
Use1Q9CQ56 CT573086.1-201ENSMUST00000227202 1074 ntBASIC12.38□□□□□ -0.43
Use1Q9CQ56 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Gm9797-201ENSMUST00000052902 613 ntBASIC12.38□□□□□ -0.43
Use1Q9CQ56 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC12.38□□□□□ -0.43
Use1Q9CQ56 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC12.37□□□□□ -0.43
Use1Q9CQ56 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC12.37□□□□□ -0.43
Use1Q9CQ56 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Gm27196-201ENSMUST00000184787 2582 ntBASIC12.37□□□□□ -0.43
Use1Q9CQ56 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Gm26464-201ENSMUST00000157094 305 ntBASIC12.37□□□□□ -0.43
Use1Q9CQ56 Mir7684-201ENSMUST00000183858 60 ntBASIC12.37□□□□□ -0.43
Use1Q9CQ56 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC12.37□□□□□ -0.43
Use1Q9CQ56 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC12.37□□□□□ -0.43
Use1Q9CQ56 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.37□□□□□ -0.43
Use1Q9CQ56 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC12.37□□□□□ -0.43
Use1Q9CQ56 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Mir6956-201ENSMUST00000183598 62 ntBASIC12.36□□□□□ -0.43
Use1Q9CQ56 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Mir8102-201ENSMUST00000184148 139 ntBASIC12.36□□□□□ -0.43
Use1Q9CQ56 Gm44985-201ENSMUST00000206202 1016 ntBASIC12.36□□□□□ -0.43
Use1Q9CQ56 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 AC155258.1-201ENSMUST00000219303 253 ntBASIC12.36□□□□□ -0.43
Use1Q9CQ56 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Use1Q9CQ56 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 63.6 ms