Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Gm12715-201ENSMUST00000121430 1128 ntBASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Gm8908-201ENSMUST00000121633 1024 ntBASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Gm2383-201ENSMUST00000181461 807 ntBASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Gm4819-201ENSMUST00000182170 1009 ntBASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Mir433-201ENSMUST00000093564 124 ntBASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC17.84■□□□□ 0.45
Usp40Q8BWR4 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Gm37912-201ENSMUST00000191895 3076 ntBASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Usp40Q8BWR4 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Gm24830-201ENSMUST00000102024 166 ntBASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Gm25890-201ENSMUST00000177643 165 ntBASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Rnu1b2-201ENSMUST00000178073 165 ntBASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Rnu1b1-201ENSMUST00000178250 165 ntBASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Gm22614-201ENSMUST00000178300 165 ntBASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Gm6652-201ENSMUST00000186414 1070 ntBASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 AC167013.1-201ENSMUST00000228592 202 ntBASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Gm22042-201ENSMUST00000082989 165 ntBASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Gm26232-201ENSMUST00000083360 166 ntBASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Gm24136-201ENSMUST00000083374 165 ntBASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Rnu1b6-201ENSMUST00000083839 166 ntBASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Gm26110-201ENSMUST00000083971 165 ntBASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp40Q8BWR4 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Gm12997-201ENSMUST00000120207 640 ntBASIC17.82■□□□□ 0.44
Usp40Q8BWR4 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Gm8798-201ENSMUST00000211877 1661 ntBASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Gm38577-201ENSMUST00000221531 4545 ntBASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp40Q8BWR4 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms