Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Gm11478-201ENSMUST00000117851 599 ntBASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Gm15460-201ENSMUST00000118147 391 ntBASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Gm24420-201ENSMUST00000176676 59 ntBASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 AC153872.1-201ENSMUST00000199539 128 ntBASIC12.72□□□□□ -0.37
Col28a1Q2UY11 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 AC156016.3-201ENSMUST00000228623 344 ntBASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Gm12091-201ENSMUST00000146791 830 ntBASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Gm6283-201ENSMUST00000182369 1000 ntBASIC12.71□□□□□ -0.37
Col28a1Q2UY11 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Gm45059-201ENSMUST00000205558 1077 ntBASIC12.71□□□□□ -0.37
Col28a1Q2UY11 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Gm9908-201ENSMUST00000211534 448 ntBASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col28a1Q2UY11 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Col28a1Q2UY11 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Gm5466-201ENSMUST00000119395 1890 ntBASIC12.7□□□□□ -0.38
Col28a1Q2UY11 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col28a1Q2UY11 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms