Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Tpm1P58771 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 Gm28323-201ENSMUST00000186817 2499 ntBASIC14.59□□□□□ -0.07
Tpm1P58771 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 Gm5648-201ENSMUST00000122244 1587 ntBASIC14.59□□□□□ -0.07
Tpm1P58771 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC14.59□□□□□ -0.07
Tpm1P58771 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Tpm1P58771 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Tpm1P58771 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Tpm1P58771 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
Tpm1P58771 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC14.58□□□□□ -0.08
Tpm1P58771 Gm3436-201ENSMUST00000179930 840 ntBASIC14.58□□□□□ -0.08
Tpm1P58771 AC225888.1-201ENSMUST00000227184 728 ntBASIC14.58□□□□□ -0.08
Tpm1P58771 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Tpm1P58771 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Tpm1P58771 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC14.58□□□□□ -0.08
Tpm1P58771 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Tpm1P58771 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Tpm1P58771 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Tpm1P58771 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Tpm1P58771 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Tpm1P58771 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC14.57□□□□□ -0.08
Tpm1P58771 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Gm15693-201ENSMUST00000120470 637 ntBASIC14.57□□□□□ -0.08
Tpm1P58771 Gm27525-201ENSMUST00000184465 107 ntBASIC14.57□□□□□ -0.08
Tpm1P58771 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC14.57□□□□□ -0.08
Tpm1P58771 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC14.57□□□□□ -0.08
Tpm1P58771 Gm18905-201ENSMUST00000205454 928 ntBASIC14.57□□□□□ -0.08
Tpm1P58771 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC14.57□□□□□ -0.08
Tpm1P58771 AC140397.2-201ENSMUST00000224213 834 ntBASIC14.57□□□□□ -0.08
Tpm1P58771 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Tpm1P58771 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC14.57□□□□□ -0.08
Tpm1P58771 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Tpm1P58771 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 AC241621.2-201ENSMUST00000223991 2151 ntBASIC14.57□□□□□ -0.08
Tpm1P58771 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Tpm1P58771 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
Tpm1P58771 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Tpm1P58771 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC14.56□□□□□ -0.08
Tpm1P58771 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Tpm1P58771 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Tpm1P58771 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Tpm1P58771 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Tpm1P58771 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Tpm1P58771 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
Tpm1P58771 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Tpm1P58771 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Tpm1P58771 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Tpm1P58771 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms