Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm28686-201ENSMUST00000187404 609 ntBASIC16.88■□□□□ 0.29
Col18a1P39061 Gm3551-201ENSMUST00000190750 664 ntBASIC16.88■□□□□ 0.29
Col18a1P39061 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col18a1P39061 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col18a1P39061 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col18a1P39061 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col18a1P39061 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col18a1P39061 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col18a1P39061 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col18a1P39061 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC16.87■□□□□ 0.29
Col18a1P39061 Gm22920-201ENSMUST00000102175 109 ntBASIC16.87■□□□□ 0.29
Col18a1P39061 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC16.87■□□□□ 0.29
Col18a1P39061 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC16.87■□□□□ 0.29
Col18a1P39061 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC16.87■□□□□ 0.29
Col18a1P39061 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC16.87■□□□□ 0.29
Col18a1P39061 Gm11836-201ENSMUST00000121022 441 ntBASIC16.87■□□□□ 0.29
Col18a1P39061 Gm22442-201ENSMUST00000157256 144 ntBASIC16.87■□□□□ 0.29
Col18a1P39061 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC16.87■□□□□ 0.29
Col18a1P39061 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC16.87■□□□□ 0.29
Col18a1P39061 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC16.87■□□□□ 0.29
Col18a1P39061 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
Col18a1P39061 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC16.87■□□□□ 0.29
Col18a1P39061 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 Gm15459-201ENSMUST00000117405 1941 ntBASIC16.87■□□□□ 0.29
Col18a1P39061 Gm8355-201ENSMUST00000177767 1941 ntBASIC16.87■□□□□ 0.29
Col18a1P39061 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Col18a1P39061 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Col18a1P39061 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 Gm6198-201ENSMUST00000191337 2929 ntBASIC16.87■□□□□ 0.29
Col18a1P39061 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC16.87■□□□□ 0.29
Col18a1P39061 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC16.87■□□□□ 0.29
Col18a1P39061 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC16.87■□□□□ 0.29
Col18a1P39061 Gm18059-201ENSMUST00000208073 580 ntBASIC16.87■□□□□ 0.29
Col18a1P39061 Gm45575-201ENSMUST00000210283 548 ntBASIC16.87■□□□□ 0.29
Col18a1P39061 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col18a1P39061 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC16.86■□□□□ 0.29
Col18a1P39061 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col18a1P39061 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Col18a1P39061 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col18a1P39061 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Col18a1P39061 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col18a1P39061 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
Col18a1P39061 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col18a1P39061 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col18a1P39061 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC16.86■□□□□ 0.29
Col18a1P39061 Gm17798-201ENSMUST00000182282 1035 ntBASIC16.86■□□□□ 0.29
Col18a1P39061 Gm37229-201ENSMUST00000191643 732 ntTSL 3 BASIC16.86■□□□□ 0.29
Col18a1P39061 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC16.86■□□□□ 0.29
Col18a1P39061 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Col18a1P39061 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
Col18a1P39061 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col18a1P39061 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col18a1P39061 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC16.86■□□□□ 0.29
Col18a1P39061 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col18a1P39061 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col18a1P39061 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col18a1P39061 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col18a1P39061 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Col18a1P39061 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC16.85■□□□□ 0.29
Col18a1P39061 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Col18a1P39061 Gm12948-201ENSMUST00000119406 682 ntBASIC16.85■□□□□ 0.29
Col18a1P39061 Gm15566-201ENSMUST00000121130 590 ntBASIC16.85■□□□□ 0.29
Col18a1P39061 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Col18a1P39061 Gm9022-201ENSMUST00000182482 992 ntBASIC16.85■□□□□ 0.29
Col18a1P39061 Gm29410-201ENSMUST00000188383 694 ntBASIC16.85■□□□□ 0.29
Col18a1P39061 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
Col18a1P39061 AC124433.1-201ENSMUST00000224483 1063 ntBASIC16.85■□□□□ 0.29
Col18a1P39061 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 n-R5s211-201ENSMUST00000093689 119 ntBASIC16.85■□□□□ 0.29
Col18a1P39061 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC16.85■□□□□ 0.29
Col18a1P39061 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms