Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msx1P13297 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msx1P13297 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Msx1P13297 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msx1P13297 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC12.52□□□□□ -0.41
Msx1P13297 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msx1P13297 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Msx1P13297 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msx1P13297 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Gm37691-201ENSMUST00000192147 2573 ntBASIC12.51□□□□□ -0.41
Msx1P13297 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC12.51□□□□□ -0.41
Msx1P13297 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Gm8810-201ENSMUST00000172895 754 ntBASIC12.51□□□□□ -0.41
Msx1P13297 Gm27331-201ENSMUST00000183705 60 ntBASIC12.51□□□□□ -0.41
Msx1P13297 Mir8109-201ENSMUST00000184375 117 ntBASIC12.51□□□□□ -0.41
Msx1P13297 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC12.51□□□□□ -0.41
Msx1P13297 Gm4857-201ENSMUST00000192718 785 ntBASIC12.51□□□□□ -0.41
Msx1P13297 Gm38002-201ENSMUST00000193255 180 ntBASIC12.51□□□□□ -0.41
Msx1P13297 Gm37533-201ENSMUST00000193848 545 ntBASIC12.51□□□□□ -0.41
Msx1P13297 Gm20239-201ENSMUST00000196610 982 ntBASIC12.51□□□□□ -0.41
Msx1P13297 Gm6312-201ENSMUST00000204060 1194 ntBASIC12.51□□□□□ -0.41
Msx1P13297 Gm44548-201ENSMUST00000208929 192 ntBASIC12.51□□□□□ -0.41
Msx1P13297 Gm17330-201ENSMUST00000221047 165 ntBASIC12.51□□□□□ -0.41
Msx1P13297 Gm8598-201ENSMUST00000221184 836 ntBASIC12.51□□□□□ -0.41
Msx1P13297 Gm24526-201ENSMUST00000082921 158 ntBASIC12.51□□□□□ -0.41
Msx1P13297 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 AC139054.1-201ENSMUST00000226898 1598 ntBASIC12.51□□□□□ -0.41
Msx1P13297 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx1P13297 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC12.5□□□□□ -0.41
Msx1P13297 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Msx1P13297 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC12.5□□□□□ -0.41
Msx1P13297 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Gm14539-201ENSMUST00000117527 174 ntBASIC12.5□□□□□ -0.41
Msx1P13297 Gm15968-201ENSMUST00000119342 1168 ntBASIC12.5□□□□□ -0.41
Msx1P13297 Gm14133-201ENSMUST00000139471 1274 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Gm6152-201ENSMUST00000151704 340 ntBASIC12.5□□□□□ -0.41
Msx1P13297 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Rn7s1-201ENSMUST00000174924 300 ntBASIC12.5□□□□□ -0.41
Msx1P13297 Rn7s2-201ENSMUST00000175032 300 ntBASIC12.5□□□□□ -0.41
Msx1P13297 Gm26461-201ENSMUST00000175064 290 ntBASIC12.5□□□□□ -0.41
Msx1P13297 Gm26736-201ENSMUST00000180425 1236 ntBASIC12.5□□□□□ -0.41
Msx1P13297 Gm27516-201ENSMUST00000184237 98 ntBASIC12.5□□□□□ -0.41
Msx1P13297 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Ighv10-4-201ENSMUST00000193702 299 ntBASIC12.5□□□□□ -0.41
Msx1P13297 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Gm7783-201ENSMUST00000204795 781 ntBASIC12.5□□□□□ -0.41
Msx1P13297 Gm34272-201ENSMUST00000208886 253 ntBASIC12.5□□□□□ -0.41
Msx1P13297 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.5□□□□□ -0.41
Msx1P13297 Gm29705-201ENSMUST00000212598 474 ntBASIC12.5□□□□□ -0.41
Msx1P13297 AC156801.1-201ENSMUST00000216158 493 ntTSL 5 BASIC12.5□□□□□ -0.41
Msx1P13297 Gm19212-201ENSMUST00000216642 862 ntBASIC12.5□□□□□ -0.41
Msx1P13297 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Gm24447-201ENSMUST00000083977 338 ntBASIC12.5□□□□□ -0.41
Msx1P13297 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC12.5□□□□□ -0.41
Msx1P13297 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Gm43908-201ENSMUST00000205074 1472 ntBASIC12.5□□□□□ -0.41
Msx1P13297 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC12.5□□□□□ -0.41
Msx1P13297 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Msx1P13297 AC154725.1-201ENSMUST00000224826 1961 ntBASIC12.5□□□□□ -0.41
Msx1P13297 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Msx1P13297 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msx1P13297 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx1P13297 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms