Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Vti1aO89116 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Vti1aO89116 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
Vti1aO89116 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Vti1aO89116 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Vti1aO89116 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Vti1aO89116 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Vti1aO89116 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC14.11□□□□□ -0.15
Vti1aO89116 Gm28386-201ENSMUST00000189147 1849 ntBASIC14.11□□□□□ -0.15
Vti1aO89116 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Vti1aO89116 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Vti1aO89116 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC14.1□□□□□ -0.15
Vti1aO89116 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Vti1aO89116 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Mir874-201ENSMUST00000104769 76 ntBASIC14.1□□□□□ -0.15
Vti1aO89116 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Gm13350-201ENSMUST00000120519 479 ntBASIC14.1□□□□□ -0.15
Vti1aO89116 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC14.1□□□□□ -0.15
Vti1aO89116 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC14.1□□□□□ -0.15
Vti1aO89116 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC14.1□□□□□ -0.15
Vti1aO89116 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC14.1□□□□□ -0.15
Vti1aO89116 Mir8109-201ENSMUST00000184375 117 ntBASIC14.1□□□□□ -0.15
Vti1aO89116 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC14.1□□□□□ -0.15
Vti1aO89116 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC14.1□□□□□ -0.15
Vti1aO89116 Gm10608-202ENSMUST00000213924 676 ntBASIC14.1□□□□□ -0.15
Vti1aO89116 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC14.1□□□□□ -0.15
Vti1aO89116 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Snora73a-201ENSMUST00000082453 205 ntBASIC14.1□□□□□ -0.15
Vti1aO89116 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Vti1aO89116 Abhd6-203ENSMUST00000225234 1958 ntBASIC14.1□□□□□ -0.15
Vti1aO89116 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Vti1aO89116 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC14.1□□□□□ -0.15
Vti1aO89116 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Vti1aO89116 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Vti1aO89116 Gm12500-202ENSMUST00000186471 2428 ntBASIC14.1□□□□□ -0.15
Vti1aO89116 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vti1aO89116 Gm18630-201ENSMUST00000222109 1397 ntBASIC14.09□□□□□ -0.15
Vti1aO89116 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Gm45684-201ENSMUST00000210244 1571 ntBASIC14.09□□□□□ -0.15
Vti1aO89116 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Vti1aO89116 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC14.09□□□□□ -0.15
Vti1aO89116 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Vti1aO89116 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Vti1aO89116 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Vti1aO89116 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Vti1aO89116 Gm8805-201ENSMUST00000117848 313 ntBASIC14.09□□□□□ -0.15
Vti1aO89116 Gm13342-201ENSMUST00000121055 207 ntBASIC14.09□□□□□ -0.15
Vti1aO89116 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC14.09□□□□□ -0.15
Vti1aO89116 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC14.09□□□□□ -0.15
Vti1aO89116 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Gm25927-201ENSMUST00000175058 117 ntBASIC14.09□□□□□ -0.15
Vti1aO89116 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Vti1aO89116 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC14.09□□□□□ -0.15
Vti1aO89116 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Vti1aO89116 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vti1aO89116 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC14.08□□□□□ -0.15
Vti1aO89116 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Vti1aO89116 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Vti1aO89116 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 59.6 ms