Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm12058-201ENSMUST00000118614 437 ntBASIC15.27■□□□□ 0.04
Scn11aQ9R053 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC15.27■□□□□ 0.04
Scn11aQ9R053 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Scn11aQ9R053 AC238940.1-201ENSMUST00000225106 1858 ntBASIC15.27■□□□□ 0.03
Scn11aQ9R053 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Scn11aQ9R053 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Scn11aQ9R053 Gm43858-201ENSMUST00000199418 1778 ntBASIC15.27■□□□□ 0.03
Scn11aQ9R053 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Scn11aQ9R053 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Scn11aQ9R053 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Scn11aQ9R053 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC15.27■□□□□ 0.03
Scn11aQ9R053 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Gm24749-201ENSMUST00000157838 343 ntBASIC15.26■□□□□ 0.03
Scn11aQ9R053 Gm13097-201ENSMUST00000210722 397 ntBASIC15.26■□□□□ 0.03
Scn11aQ9R053 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC15.26■□□□□ 0.03
Scn11aQ9R053 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 AC123665.1-201ENSMUST00000228204 438 ntBASIC15.26■□□□□ 0.03
Scn11aQ9R053 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Scn11aQ9R053 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Gm6963-201ENSMUST00000147879 379 ntBASIC15.25■□□□□ 0.03
Scn11aQ9R053 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC15.25■□□□□ 0.03
Scn11aQ9R053 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC15.25■□□□□ 0.03
Scn11aQ9R053 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Scn11aQ9R053 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
Scn11aQ9R053 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC15.24■□□□□ 0.03
Scn11aQ9R053 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC15.24■□□□□ 0.03
Scn11aQ9R053 AC113031.8-201ENSMUST00000227856 631 ntBASIC15.24■□□□□ 0.03
Scn11aQ9R053 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC15.24■□□□□ 0.03
Scn11aQ9R053 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms