Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm3756-201ENSMUST00000169182 1355 ntBASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Gm7118-201ENSMUST00000200167 1003 ntBASIC14.17□□□□□ -0.14
Trim54Q9ERP3 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Gm15897-201ENSMUST00000117770 1486 ntBASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trim54Q9ERP3 AC166491.1-201ENSMUST00000227053 2308 ntBASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Gm13297-201ENSMUST00000120205 934 ntBASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Gm11978-201ENSMUST00000122315 466 ntBASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Gm17208-201ENSMUST00000168388 535 ntBASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Gm37489-201ENSMUST00000191883 159 ntBASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Gm4857-201ENSMUST00000192718 785 ntBASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Gm6621-201ENSMUST00000193251 772 ntBASIC14.16□□□□□ -0.14
Trim54Q9ERP3 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC14.16□□□□□ -0.14
Trim54Q9ERP3 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim54Q9ERP3 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms