Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Mir7684-201ENSMUST00000183858 60 ntBASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Mir8102-201ENSMUST00000184148 139 ntBASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Mir7023-201ENSMUST00000185093 64 ntBASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Gm45841-201ENSMUST00000207700 164 ntBASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC12.94□□□□□ -0.34
Lima1Q9ERG0 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Mir7221-201ENSMUST00000184009 72 ntBASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 AC159114.1-201ENSMUST00000220349 266 ntBASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lima1Q9ERG0 Gm42690-201ENSMUST00000197921 1836 ntBASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Paupar-201ENSMUST00000194826 3482 ntBASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Gm13859-201ENSMUST00000119936 1423 ntBASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Gm9522-201ENSMUST00000182394 926 ntBASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Gm27838-201ENSMUST00000184829 128 ntBASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Gm29667-201ENSMUST00000190817 490 ntBASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 AC155298.2-201ENSMUST00000225485 6226 ntBASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC12.92□□□□□ -0.34
Lima1Q9ERG0 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms