Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Gm44405-201ENSMUST00000198952 126 ntBASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cpsf1Q9EPU4 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 AC125209.1-201ENSMUST00000225812 766 ntBASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cpsf1Q9EPU4 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
Cpsf1Q9EPU4 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cpsf1Q9EPU4 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cpsf1Q9EPU4 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC17.83■□□□□ 0.45
Cpsf1Q9EPU4 Gm11597-201ENSMUST00000121423 964 ntBASIC17.83■□□□□ 0.45
Cpsf1Q9EPU4 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
Cpsf1Q9EPU4 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC17.83■□□□□ 0.45
Cpsf1Q9EPU4 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cpsf1Q9EPU4 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cpsf1Q9EPU4 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cpsf1Q9EPU4 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 Gm7993-201ENSMUST00000200970 1384 ntBASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cpsf1Q9EPU4 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cpsf1Q9EPU4 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms