Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC15.43■□□□□ 0.06
Trim56Q80VI1 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Gm25927-201ENSMUST00000175058 117 ntBASIC15.43■□□□□ 0.06
Trim56Q80VI1 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 AC153962.4-201ENSMUST00000217878 242 ntBASIC15.43■□□□□ 0.06
Trim56Q80VI1 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC15.43■□□□□ 0.06
Trim56Q80VI1 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
Trim56Q80VI1 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC15.42■□□□□ 0.06
Trim56Q80VI1 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Gm13392-201ENSMUST00000117708 150 ntBASIC15.42■□□□□ 0.06
Trim56Q80VI1 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC15.42■□□□□ 0.06
Trim56Q80VI1 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC15.42■□□□□ 0.06
Trim56Q80VI1 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC15.42■□□□□ 0.06
Trim56Q80VI1 AC125350.2-201ENSMUST00000224737 727 ntBASIC15.42■□□□□ 0.06
Trim56Q80VI1 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim56Q80VI1 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC15.41■□□□□ 0.06
Trim56Q80VI1 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Gm42863-201ENSMUST00000197875 2958 ntBASIC15.41■□□□□ 0.06
Trim56Q80VI1 Gm9200-201ENSMUST00000118513 1354 ntBASIC15.41■□□□□ 0.06
Trim56Q80VI1 Gm37861-201ENSMUST00000193534 2869 ntBASIC15.41■□□□□ 0.06
Trim56Q80VI1 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Trim56Q80VI1 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Gm14704-201ENSMUST00000120300 874 ntBASIC15.41■□□□□ 0.06
Trim56Q80VI1 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC15.41■□□□□ 0.06
Trim56Q80VI1 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Gm22121-201ENSMUST00000175148 54 ntBASIC15.41■□□□□ 0.06
Trim56Q80VI1 Gm5370-201ENSMUST00000187187 574 ntBASIC15.41■□□□□ 0.06
Trim56Q80VI1 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim56Q80VI1 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms