Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sh3rf1Q69ZI1 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Gm4984-201ENSMUST00000115987 360 ntBASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Gm17150-201ENSMUST00000165577 381 ntBASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Gm4804-201ENSMUST00000182234 999 ntBASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Ighv1-51-201ENSMUST00000192903 354 ntBASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Gm5035-201ENSMUST00000215581 927 ntBASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sh3rf1Q69ZI1 AC154527.2-201ENSMUST00000225256 1466 ntBASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Gm18307-201ENSMUST00000206864 949 ntBASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 AC150560.1-201ENSMUST00000227731 1187 ntBASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sh3rf1Q69ZI1 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Gm42829-201ENSMUST00000198417 2585 ntBASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 AC241621.2-201ENSMUST00000223991 2151 ntBASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Gm43463-201ENSMUST00000195967 1803 ntBASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Mir692-1-201ENSMUST00000102263 109 ntBASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Gm7558-201ENSMUST00000193221 1165 ntBASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 AC153962.4-201ENSMUST00000217878 242 ntBASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Gm7446-201ENSMUST00000221035 1240 ntBASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 AC155252.1-201ENSMUST00000226462 1208 ntBASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Sh3rf1Q69ZI1 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms