Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm14726-201ENSMUST00000120623 896 ntBASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm31256-201ENSMUST00000194705 506 ntBASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm19931-201ENSMUST00000198920 368 ntBASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm18393-201ENSMUST00000208349 1131 ntBASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm44551-201ENSMUST00000208804 171 ntBASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Ccdc88aQ5SNZ0 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm27046-201ENSMUST00000182160 463 ntBASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm9061-201ENSMUST00000182707 1006 ntBASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm18556-201ENSMUST00000219748 1031 ntBASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm8862-201ENSMUST00000198379 1346 ntBASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
Ccdc88aQ5SNZ0 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm44967-201ENSMUST00000207047 631 ntBASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm45638-201ENSMUST00000211507 2878 ntBASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm44775-201ENSMUST00000207266 1456 ntBASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm11628-201ENSMUST00000117568 171 ntBASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC14.91□□□□□ -0.02
Ccdc88aQ5SNZ0 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ccdc88aQ5SNZ0 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms