Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Ntrk2-209ENSMUST00000225950 2640 ntBASIC11.31□□□□□ -0.6
Nkx3-1P97436 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC11.31□□□□□ -0.6
Nkx3-1P97436 Gm9176-201ENSMUST00000219955 1120 ntBASIC11.31□□□□□ -0.6
Nkx3-1P97436 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Nkx3-1P97436 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Gm17208-201ENSMUST00000168388 535 ntBASIC11.3□□□□□ -0.6
Nkx3-1P97436 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Gm29199-201ENSMUST00000187766 775 ntBASIC11.3□□□□□ -0.6
Nkx3-1P97436 Gm18827-201ENSMUST00000188341 790 ntBASIC11.3□□□□□ -0.6
Nkx3-1P97436 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Gm5781-201ENSMUST00000219792 443 ntBASIC11.3□□□□□ -0.6
Nkx3-1P97436 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Gm43273-201ENSMUST00000199649 2594 ntBASIC11.3□□□□□ -0.6
Nkx3-1P97436 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Nkx3-1P97436 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Gm2420-202ENSMUST00000202224 2249 ntBASIC11.29□□□□□ -0.6
Nkx3-1P97436 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms