Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Gm42479-201ENSMUST00000198654 1356 ntBASIC10.3□□□□□ -0.76
Hoxd3P09027 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Gm15544-201ENSMUST00000118776 1531 ntBASIC10.3□□□□□ -0.76
Hoxd3P09027 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Zfp966-202ENSMUST00000109018 733 ntTSL 3 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Zfp968-202ENSMUST00000109048 733 ntTSL 3 BASIC10.3□□□□□ -0.76
Hoxd3P09027 BC117090-201ENSMUST00000114850 387 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Gm14301-201ENSMUST00000120181 324 ntBASIC10.3□□□□□ -0.76
Hoxd3P09027 Tmsb15l-201ENSMUST00000127404 816 ntAPPRIS P1 TSL 2 BASIC10.3□□□□□ -0.76
Hoxd3P09027 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Gm27231-201ENSMUST00000185191 551 ntTSL 5 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Gm27731-201ENSMUST00000185192 107 ntBASIC10.3□□□□□ -0.76
Hoxd3P09027 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Gm8581-201ENSMUST00000188636 890 ntBASIC10.3□□□□□ -0.76
Hoxd3P09027 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC10.3□□□□□ -0.76
Hoxd3P09027 AC122459.1-201ENSMUST00000228373 885 ntBASIC10.3□□□□□ -0.76
Hoxd3P09027 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Ccdc54-201ENSMUST00000062439 1296 ntAPPRIS P1 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 AC139350.1-201ENSMUST00000227064 1594 ntBASIC10.3□□□□□ -0.76
Hoxd3P09027 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC10.3□□□□□ -0.76
Hoxd3P09027 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Hoxd3P09027 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC10.29□□□□□ -0.76
Hoxd3P09027 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC10.29□□□□□ -0.76
Hoxd3P09027 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC10.29□□□□□ -0.76
Hoxd3P09027 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC10.29□□□□□ -0.76
Hoxd3P09027 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Gm42928-201ENSMUST00000197338 3339 ntBASIC10.29□□□□□ -0.76
Hoxd3P09027 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC10.29□□□□□ -0.76
Hoxd3P09027 Gm12742-201ENSMUST00000117326 410 ntBASIC10.29□□□□□ -0.76
Hoxd3P09027 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC10.29□□□□□ -0.76
Hoxd3P09027 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC10.29□□□□□ -0.76
Hoxd3P09027 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Bud31-206ENSMUST00000162308 705 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Gm5726-201ENSMUST00000173886 924 ntAPPRIS P1 BASIC10.29□□□□□ -0.76
Hoxd3P09027 Gm8677-201ENSMUST00000174637 924 ntAPPRIS P1 BASIC10.29□□□□□ -0.76
Hoxd3P09027 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Hoxd3P09027 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC10.29□□□□□ -0.76
Hoxd3P09027 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC10.29□□□□□ -0.76
Hoxd3P09027 Gm43818-201ENSMUST00000200605 466 ntBASIC10.29□□□□□ -0.76
Hoxd3P09027 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC10.29□□□□□ -0.76
Retrieved 100 of 76,532 protein–RNA pairs in 62.8 ms