Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Chd3B1AR17 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Chd3B1AR17 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Chd3B1AR17 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Chd3B1AR17 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Chd3B1AR17 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Chd3B1AR17 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC12.81□□□□□ -0.36
Chd3B1AR17 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Mir7221-201ENSMUST00000184009 72 ntBASIC12.81□□□□□ -0.36
Chd3B1AR17 Gm7895-201ENSMUST00000187459 1173 ntBASIC12.81□□□□□ -0.36
Chd3B1AR17 Gm43179-201ENSMUST00000198797 275 ntBASIC12.81□□□□□ -0.36
Chd3B1AR17 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC12.81□□□□□ -0.36
Chd3B1AR17 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Chd3B1AR17 Gm17383-201ENSMUST00000078739 1041 ntBASIC12.81□□□□□ -0.36
Chd3B1AR17 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.81□□□□□ -0.36
Chd3B1AR17 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Chd3B1AR17 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
Chd3B1AR17 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
Chd3B1AR17 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Chd3B1AR17 Gm10729-202ENSMUST00000193403 1375 ntBASIC12.81□□□□□ -0.36
Chd3B1AR17 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Chd3B1AR17 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Gm7809-201ENSMUST00000153199 742 ntBASIC12.81□□□□□ -0.36
Chd3B1AR17 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC12.81□□□□□ -0.36
Chd3B1AR17 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC12.81□□□□□ -0.36
Chd3B1AR17 Gm9061-201ENSMUST00000182707 1006 ntBASIC12.81□□□□□ -0.36
Chd3B1AR17 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC12.81□□□□□ -0.36
Chd3B1AR17 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC12.81□□□□□ -0.36
Chd3B1AR17 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC12.8□□□□□ -0.36
Chd3B1AR17 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 AC122314.1-201ENSMUST00000223056 2239 ntBASIC12.8□□□□□ -0.36
Chd3B1AR17 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Chd3B1AR17 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Chd3B1AR17 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC12.8□□□□□ -0.36
Chd3B1AR17 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Chd3B1AR17 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Chd3B1AR17 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Chd3B1AR17 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Chd3B1AR17 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Chd3B1AR17 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Chd3B1AR17 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Chd3B1AR17 Gm22323-201ENSMUST00000103832 109 ntBASIC12.8□□□□□ -0.36
Chd3B1AR17 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC12.8□□□□□ -0.36
Chd3B1AR17 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC12.8□□□□□ -0.36
Chd3B1AR17 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Gm17208-201ENSMUST00000168388 535 ntBASIC12.8□□□□□ -0.36
Chd3B1AR17 Gm8738-201ENSMUST00000172606 329 ntBASIC12.8□□□□□ -0.36
Chd3B1AR17 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC12.8□□□□□ -0.36
Chd3B1AR17 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Ighv1-62-201ENSMUST00000193406 350 ntBASIC12.8□□□□□ -0.36
Chd3B1AR17 AC154171.1-201ENSMUST00000224610 643 ntBASIC12.8□□□□□ -0.36
Chd3B1AR17 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Chd3B1AR17 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Chd3B1AR17 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Chd3B1AR17 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Chd3B1AR17 Gm38346-201ENSMUST00000192379 2639 ntBASIC12.79□□□□□ -0.36
Chd3B1AR17 Gm9924-202ENSMUST00000192760 2311 ntBASIC12.79□□□□□ -0.36
Chd3B1AR17 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms