Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Gm5863-201ENSMUST00000121760 1008 ntBASIC15.3■□□□□ 0.04
Scn11aQ9R053 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Gm45706-201ENSMUST00000213063 2136 ntBASIC15.3■□□□□ 0.04
Scn11aQ9R053 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Scn11aQ9R053 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC15.29■□□□□ 0.04
Scn11aQ9R053 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Gm45118-201ENSMUST00000208928 825 ntBASIC15.29■□□□□ 0.04
Scn11aQ9R053 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 AC131330.1-201ENSMUST00000227814 1015 ntBASIC15.29■□□□□ 0.04
Scn11aQ9R053 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Gm5884-201ENSMUST00000036712 1479 ntBASIC15.29■□□□□ 0.04
Scn11aQ9R053 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Gm43081-201ENSMUST00000199082 1380 ntBASIC15.29■□□□□ 0.04
Scn11aQ9R053 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Gm44967-201ENSMUST00000207047 631 ntBASIC15.29■□□□□ 0.04
Scn11aQ9R053 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Scn11aQ9R053 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Gm11667-201ENSMUST00000119828 486 ntBASIC15.28■□□□□ 0.04
Scn11aQ9R053 Gm44262-201ENSMUST00000204969 372 ntBASIC15.28■□□□□ 0.04
Scn11aQ9R053 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Scn11aQ9R053 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Scn11aQ9R053 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms