Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC12.21□□□□□ -0.45
Cdc40Q9DC48 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdc40Q9DC48 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Cdc40Q9DC48 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Cdc40Q9DC48 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Cdc40Q9DC48 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Cdc40Q9DC48 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdc40Q9DC48 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.46
Cdc40Q9DC48 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Cdc40Q9DC48 Ntrk2-208ENSMUST00000225583 2719 ntBASIC12.21□□□□□ -0.46
Cdc40Q9DC48 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Cdc40Q9DC48 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Cdc40Q9DC48 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Cdc40Q9DC48 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Cdc40Q9DC48 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Cdc40Q9DC48 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Cdc40Q9DC48 Ankra2-208ENSMUST00000226100 1476 ntBASIC12.21□□□□□ -0.46
Cdc40Q9DC48 AC131068.2-201ENSMUST00000226175 1453 ntBASIC12.21□□□□□ -0.46
Cdc40Q9DC48 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Cdc40Q9DC48 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Gm4782-201ENSMUST00000168705 2046 ntBASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Gm29649-201ENSMUST00000185649 419 ntBASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Gm17870-201ENSMUST00000219489 1174 ntBASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
Cdc40Q9DC48 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Gm13226-201ENSMUST00000117838 404 ntBASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Gm27731-201ENSMUST00000185192 107 ntBASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Gm45784-201ENSMUST00000188360 142 ntBASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Grk6-205ENSMUST00000224653 2976 ntBASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cdc40Q9DC48 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 69.1 ms