Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Smc1aQ9CU62 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 AC155298.2-201ENSMUST00000225485 6226 ntBASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Gm13226-201ENSMUST00000117838 404 ntBASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Trav4d-2-201ENSMUST00000120914 335 ntBASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Gm38230-201ENSMUST00000193572 1159 ntBASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Gm43094-201ENSMUST00000196549 921 ntBASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Gm8463-201ENSMUST00000208573 613 ntBASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 AC192088.1-201ENSMUST00000227561 301 ntBASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Gm38037-201ENSMUST00000192600 1624 ntBASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Gm43677-201ENSMUST00000198098 2378 ntBASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Gm44891-201ENSMUST00000208817 2223 ntBASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Smc1aQ9CU62 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Gm11814-201ENSMUST00000119515 929 ntBASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Smc1aQ9CU62 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Gm12928-201ENSMUST00000117115 573 ntBASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Gm13385-201ENSMUST00000121089 220 ntBASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Gm7287-201ENSMUST00000205267 602 ntBASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Gm45242-201ENSMUST00000210666 2129 ntBASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 AC164702.1-201ENSMUST00000220135 2212 ntBASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Smc1aQ9CU62 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms