Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Gm13689-201ENSMUST00000119360 685 ntBASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC12.6□□□□□ -0.39
Lsm1Q8VC85 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 AC093022.5-201ENSMUST00000226841 1079 ntBASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Wdyhv1-203ENSMUST00000226889 394 ntBASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC12.6□□□□□ -0.39
Lsm1Q8VC85 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Gm7114-201ENSMUST00000190159 1789 ntBASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Gm15920-201ENSMUST00000118998 402 ntBASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Mir7023-201ENSMUST00000185093 64 ntBASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 AC132467.2-202ENSMUST00000227726 559 ntBASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.59□□□□□ -0.39
Lsm1Q8VC85 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lsm1Q8VC85 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.39
Lsm1Q8VC85 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.39
Lsm1Q8VC85 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Lsm1Q8VC85 Gm3052-202ENSMUST00000188254 2224 ntBASIC12.58□□□□□ -0.39
Lsm1Q8VC85 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Ldha-ps-201ENSMUST00000119390 995 ntBASIC12.58□□□□□ -0.4
Lsm1Q8VC85 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Gm20949-201ENSMUST00000206478 952 ntBASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Rnf17-202ENSMUST00000223627 2077 ntBASIC12.58□□□□□ -0.4
Lsm1Q8VC85 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 105 ms