Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 n-R5s14-201ENSMUST00000122688 107 ntBASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Gm5597-201ENSMUST00000182353 1193 ntBASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Gm8285-201ENSMUST00000208293 759 ntBASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Gm44443-201ENSMUST00000204396 5633 ntBASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col6a6Q8C6K9 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Gm5466-201ENSMUST00000119395 1890 ntBASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Gm11331-201ENSMUST00000119764 288 ntBASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Il17rd-203ENSMUST00000225146 3366 ntBASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Gm44775-201ENSMUST00000207266 1456 ntBASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col6a6Q8C6K9 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Gm7789-202ENSMUST00000211273 1400 ntBASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Gm25214-201ENSMUST00000104573 129 ntBASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Gm20426-201ENSMUST00000173657 440 ntBASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Gm9004-201ENSMUST00000218739 1222 ntBASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Gm12616-201ENSMUST00000118594 382 ntBASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col6a6Q8C6K9 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms