Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Trim28Q62318 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC16.92■□□□□ 0.3
Trim28Q62318 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Trim28Q62318 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Trim28Q62318 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
Trim28Q62318 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Trim28Q62318 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Trim28Q62318 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC16.91■□□□□ 0.3
Trim28Q62318 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC16.91■□□□□ 0.3
Trim28Q62318 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC16.91■□□□□ 0.3
Trim28Q62318 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC16.91■□□□□ 0.3
Trim28Q62318 Gm5904-201ENSMUST00000210286 865 ntBASIC16.91■□□□□ 0.3
Trim28Q62318 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC16.91■□□□□ 0.3
Trim28Q62318 AC165260.3-202ENSMUST00000224550 1031 ntBASIC16.91■□□□□ 0.3
Trim28Q62318 AC108416.1-202ENSMUST00000228927 1201 ntBASIC16.91■□□□□ 0.3
Trim28Q62318 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Trim28Q62318 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Trim28Q62318 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim28Q62318 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC16.91■□□□□ 0.3
Trim28Q62318 AC238940.1-201ENSMUST00000225106 1858 ntBASIC16.9■□□□□ 0.3
Trim28Q62318 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Trim28Q62318 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC16.9■□□□□ 0.3
Trim28Q62318 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Gm45605-201ENSMUST00000210265 4269 ntBASIC16.9■□□□□ 0.3
Trim28Q62318 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Trim28Q62318 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
Trim28Q62318 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC16.9■□□□□ 0.3
Trim28Q62318 Gm27320-201ENSMUST00000184892 109 ntBASIC16.9■□□□□ 0.3
Trim28Q62318 Gm44405-201ENSMUST00000198952 126 ntBASIC16.9■□□□□ 0.3
Trim28Q62318 AC166095.1-201ENSMUST00000223731 1241 ntBASIC16.9■□□□□ 0.3
Trim28Q62318 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Trim28Q62318 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Trim28Q62318 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
Trim28Q62318 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Trim28Q62318 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim28Q62318 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
Trim28Q62318 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Trim28Q62318 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Trim28Q62318 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
Trim28Q62318 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Trim28Q62318 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Trim28Q62318 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC16.89■□□□□ 0.29
Trim28Q62318 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim28Q62318 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim28Q62318 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim28Q62318 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
Trim28Q62318 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC16.89■□□□□ 0.29
Trim28Q62318 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim28Q62318 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC16.89■□□□□ 0.29
Trim28Q62318 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC16.89■□□□□ 0.29
Trim28Q62318 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC16.89■□□□□ 0.29
Trim28Q62318 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC16.89■□□□□ 0.29
Trim28Q62318 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim28Q62318 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim28Q62318 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC16.89■□□□□ 0.29
Trim28Q62318 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC16.89■□□□□ 0.29
Trim28Q62318 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim28Q62318 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Trim28Q62318 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim28Q62318 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim28Q62318 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms