Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Col11a1Q61245 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC14.37□□□□□ -0.11
Col11a1Q61245 CT030637.1-201ENSMUST00000228016 669 ntBASIC14.37□□□□□ -0.11
Col11a1Q61245 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Col11a1Q61245 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
Col11a1Q61245 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Col11a1Q61245 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
Col11a1Q61245 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Col11a1Q61245 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Col11a1Q61245 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Col11a1Q61245 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col11a1Q61245 Gm2420-202ENSMUST00000202224 2249 ntBASIC14.36□□□□□ -0.11
Col11a1Q61245 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Col11a1Q61245 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Gm11892-201ENSMUST00000117711 1202 ntBASIC14.36□□□□□ -0.11
Col11a1Q61245 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC14.36□□□□□ -0.11
Col11a1Q61245 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC14.36□□□□□ -0.11
Col11a1Q61245 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC14.36□□□□□ -0.11
Col11a1Q61245 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col11a1Q61245 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Col11a1Q61245 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Gm15573-201ENSMUST00000119487 540 ntBASIC14.36□□□□□ -0.11
Col11a1Q61245 Gm12899-201ENSMUST00000120565 551 ntBASIC14.36□□□□□ -0.11
Col11a1Q61245 Gm22138-201ENSMUST00000158748 128 ntBASIC14.36□□□□□ -0.11
Col11a1Q61245 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Gm9463-201ENSMUST00000206707 601 ntBASIC14.36□□□□□ -0.11
Col11a1Q61245 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC14.36□□□□□ -0.11
Col11a1Q61245 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC14.36□□□□□ -0.11
Col11a1Q61245 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col11a1Q61245 Gm14752-201ENSMUST00000120719 2075 ntBASIC14.36□□□□□ -0.11
Col11a1Q61245 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Col11a1Q61245 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col11a1Q61245 Gm21451-201ENSMUST00000111062 2775 ntBASIC14.35□□□□□ -0.11
Col11a1Q61245 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Col11a1Q61245 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col11a1Q61245 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col11a1Q61245 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC14.35□□□□□ -0.11
Col11a1Q61245 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC14.35□□□□□ -0.11
Col11a1Q61245 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
Col11a1Q61245 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col11a1Q61245 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col11a1Q61245 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col11a1Q61245 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col11a1Q61245 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col11a1Q61245 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col11a1Q61245 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Col11a1Q61245 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col11a1Q61245 Gm16397-201ENSMUST00000122201 494 ntBASIC14.35□□□□□ -0.11
Col11a1Q61245 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC14.35□□□□□ -0.11
Col11a1Q61245 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col11a1Q61245 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC14.35□□□□□ -0.11
Col11a1Q61245 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col11a1Q61245 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col11a1Q61245 Gm44980-201ENSMUST00000205826 314 ntBASIC14.35□□□□□ -0.11
Col11a1Q61245 Gm4607-201ENSMUST00000206649 577 ntBASIC14.35□□□□□ -0.11
Col11a1Q61245 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC14.35□□□□□ -0.11
Col11a1Q61245 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC14.35□□□□□ -0.11
Col11a1Q61245 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col11a1Q61245 Sorbs3-204ENSMUST00000227929 2460 ntBASIC14.35□□□□□ -0.11
Col11a1Q61245 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms