Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col28a1Q2UY11 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Col28a1Q2UY11 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Gm28323-201ENSMUST00000186817 2499 ntBASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Gm6912-201ENSMUST00000117218 544 ntBASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Gm45841-201ENSMUST00000207700 164 ntBASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Gm6180-201ENSMUST00000065243 498 ntBASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 AC241621.2-201ENSMUST00000223991 2151 ntBASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC12.77□□□□□ -0.37
Col28a1Q2UY11 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Gm18263-201ENSMUST00000220846 1928 ntBASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 AC164107.1-201ENSMUST00000227730 2161 ntBASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Gm4875-201ENSMUST00000118257 786 ntBASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Gm13385-201ENSMUST00000121089 220 ntBASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Gm33320-201ENSMUST00000192232 530 ntBASIC12.76□□□□□ -0.37
Col28a1Q2UY11 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Gm46209-201ENSMUST00000217912 553 ntBASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col28a1Q2UY11 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Gm15770-201ENSMUST00000117498 584 ntBASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 67.9 ms