Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Sox9Q04887 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox9Q04887 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox9Q04887 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox9Q04887 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Sox9Q04887 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Sox9Q04887 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sox9Q04887 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC13.52□□□□□ -0.24
Sox9Q04887 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sox9Q04887 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sox9Q04887 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sox9Q04887 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC13.52□□□□□ -0.24
Sox9Q04887 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sox9Q04887 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 Mir6958-201ENSMUST00000184207 73 ntBASIC13.52□□□□□ -0.25
Sox9Q04887 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC13.52□□□□□ -0.25
Sox9Q04887 Gm6458-201ENSMUST00000211573 635 ntBASIC13.52□□□□□ -0.25
Sox9Q04887 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 Gm8712-201ENSMUST00000221090 701 ntBASIC13.52□□□□□ -0.25
Sox9Q04887 CT025551.1-201ENSMUST00000223996 692 ntBASIC13.52□□□□□ -0.25
Sox9Q04887 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC13.52□□□□□ -0.25
Sox9Q04887 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC13.52□□□□□ -0.25
Sox9Q04887 Gm37737-201ENSMUST00000195013 1638 ntBASIC13.52□□□□□ -0.25
Sox9Q04887 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Sox9Q04887 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Sox9Q04887 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox9Q04887 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC13.51□□□□□ -0.25
Sox9Q04887 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Sox9Q04887 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC13.51□□□□□ -0.25
Sox9Q04887 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Sox9Q04887 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC13.51□□□□□ -0.25
Sox9Q04887 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC13.51□□□□□ -0.25
Sox9Q04887 Gm13875-201ENSMUST00000120162 282 ntBASIC13.51□□□□□ -0.25
Sox9Q04887 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC13.51□□□□□ -0.25
Sox9Q04887 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC13.51□□□□□ -0.25
Sox9Q04887 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC13.51□□□□□ -0.25
Sox9Q04887 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC13.51□□□□□ -0.25
Sox9Q04887 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC13.51□□□□□ -0.25
Sox9Q04887 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC13.51□□□□□ -0.25
Sox9Q04887 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC13.51□□□□□ -0.25
Sox9Q04887 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC13.51□□□□□ -0.25
Sox9Q04887 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC13.51□□□□□ -0.25
Sox9Q04887 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC13.51□□□□□ -0.25
Sox9Q04887 Gm7848-201ENSMUST00000210739 718 ntBASIC13.51□□□□□ -0.25
Sox9Q04887 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC13.51□□□□□ -0.25
Sox9Q04887 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Dhrs4-202ENSMUST00000226168 828 ntBASIC13.51□□□□□ -0.25
Sox9Q04887 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Sox9Q04887 AC154276.3-201ENSMUST00000227643 998 ntBASIC13.51□□□□□ -0.25
Sox9Q04887 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC13.51□□□□□ -0.25
Sox9Q04887 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Sox9Q04887 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox9Q04887 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC13.51□□□□□ -0.25
Sox9Q04887 Gm37437-201ENSMUST00000194451 1937 ntBASIC13.51□□□□□ -0.25
Sox9Q04887 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sox9Q04887 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sox9Q04887 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sox9Q04887 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sox9Q04887 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Sox9Q04887 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sox9Q04887 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Sox9Q04887 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sox9Q04887 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sox9Q04887 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sox9Q04887 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sox9Q04887 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms