Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col6a1Q04857 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col6a1Q04857 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col6a1Q04857 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col6a1Q04857 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col6a1Q04857 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col6a1Q04857 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Col6a1Q04857 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC14.5□□□□□ -0.09
Col6a1Q04857 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col6a1Q04857 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col6a1Q04857 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC14.5□□□□□ -0.09
Col6a1Q04857 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Col6a1Q04857 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 Gm18630-201ENSMUST00000222109 1397 ntBASIC14.49□□□□□ -0.09
Col6a1Q04857 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
Col6a1Q04857 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
Col6a1Q04857 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC14.49□□□□□ -0.09
Col6a1Q04857 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 Gm11405-201ENSMUST00000118689 1556 ntBASIC14.49□□□□□ -0.09
Col6a1Q04857 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Col6a1Q04857 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC14.49□□□□□ -0.09
Col6a1Q04857 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
Col6a1Q04857 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 Gm7857-201ENSMUST00000117957 358 ntBASIC14.49□□□□□ -0.09
Col6a1Q04857 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC14.49□□□□□ -0.09
Col6a1Q04857 Mir7032-201ENSMUST00000185154 79 ntBASIC14.49□□□□□ -0.09
Col6a1Q04857 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 AC131997.1-201ENSMUST00000228611 1229 ntBASIC14.49□□□□□ -0.09
Col6a1Q04857 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col6a1Q04857 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Col6a1Q04857 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Col6a1Q04857 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC14.48□□□□□ -0.09
Col6a1Q04857 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Col6a1Q04857 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC14.48□□□□□ -0.09
Col6a1Q04857 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
Col6a1Q04857 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Col6a1Q04857 AC126549.2-201ENSMUST00000223997 1976 ntBASIC14.48□□□□□ -0.09
Col6a1Q04857 Abhd6-203ENSMUST00000225234 1958 ntBASIC14.48□□□□□ -0.09
Col6a1Q04857 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC14.48□□□□□ -0.09
Col6a1Q04857 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
Col6a1Q04857 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Col6a1Q04857 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
Col6a1Q04857 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Gm13886-201ENSMUST00000117876 1183 ntBASIC14.48□□□□□ -0.09
Col6a1Q04857 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC14.48□□□□□ -0.09
Col6a1Q04857 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC14.48□□□□□ -0.09
Col6a1Q04857 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC14.48□□□□□ -0.09
Col6a1Q04857 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC14.48□□□□□ -0.09
Col6a1Q04857 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC14.48□□□□□ -0.09
Col6a1Q04857 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Col6a1Q04857 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Gm10782-202ENSMUST00000223775 1480 ntBASIC14.48□□□□□ -0.09
Col6a1Q04857 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC14.48□□□□□ -0.09
Col6a1Q04857 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Col6a1Q04857 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col6a1Q04857 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
Col6a1Q04857 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Gm15889-202ENSMUST00000212669 2443 ntBASIC14.47□□□□□ -0.09
Col6a1Q04857 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Col6a1Q04857 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Col6a1Q04857 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Col6a1Q04857 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Col6a1Q04857 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col6a1Q04857 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms